315859c5586116434ea3b7ce97512a5e2a1030e2,scanpy/exs/builtin.py,,moignard15_raw,#,275

Before Change

    ddata["xroot"] = ddata["X"][ddata["iroot"]] 
    // annotate rows of X with Moignard et al. (2015) experimental cell groups
    groups_names = ["HF", "NP", "PS", "4SG", "4SFG"]
    groups = [] // a list with n entries (one for each sample)
    for name in cellnames:
        for groupname in groups_names:
            if name.startswith(groupname):
                groups.append(groupname)
    // groups are categorical annotation for rows of X
    ddata["rowcat"] = {"groups": groups}
    // add additional metadata for the groups, we want them to be ordered
    // and we want custom colors for each group
    ddata["groups_names"] = groups_names    
    ddata["groups_colors"] = ["//D7A83E", "/ǝAAE5D", "/릉ABC", "//AF353A", "/�"]

After Change

    adata.var["xroot"] = adata.X[iroot, :]
    // defne cell type labels
    cell_types = ["HF", "NP", "PS", "4SG", "4SFG"]
    adata.smp["cell_type"] = [
        next(t for t in cell_types if n.startswith(t))
        for n in adata.smp_names]

    // custom colors according to Moignard et al. (2015) experimental cell groups
    adata.vis["cell_type"] = OrderedDict(zip(
        cell_types,

Instances