18dfa3c8f51193ba20e56777e2fbf81fcad0dc44,test/test_sca.py,,,#,9

Before Change

msa.output("msa",filename="data/test_out")

print("")
print("Testing pairwise alignment using SCA.")
psa = SCA("data/test.psq")
psa.align(pprint=True,distance=True)

After Change

// load sca-file
data_dir = os.path.join(os.path.dirname(lingpy.__file__), "..", "test", "data")
msa = SCA(os.path.join(data_dir, "test.msq"))
msa.lib_align()
print("")
print("Multiple alignment with MSA from text-file.")
print("Writing result to file.")
msa.output("msa",filename=os.path.join(data_dir, "test_out"))

print("")
//print("Testing pairwise alignment using SCA.")

Instances