1a94585294f233bfd29313f24dff7d3686fd4d81,src/biotite/structure/util.py,,get_std_guanine,#,143

Before Change

    atom9 = Atom([-1.999, 1.087, 0.000], atom_name="C2", res_name="G")
    atom10 = Atom([-2.949, 0.139, -0.001], atom_name="N2", res_name="G")
    atom11 = Atom([-2.342, 2.364, 0.001], atom_name="N3", res_name="G")
    atom12 = Atom([-1.265, 3.177, 0.000], atom_name="C4", res_name="G")
    guanine = array([atom1, atom2, atom3, atom4, atom5, atom6, atom7, atom8, atom9, atom10, atom11, atom12]) 
    return guanine

def get_std_thymine():

After Change

                                )

    guanine = array([atom1, atom2, atom3, atom4, atom5, atom6, atom7, atom8, atom9, atom10, atom11, atom12]) 
    return guanine, [pyrimidine_center, imidazole_center]

def get_std_thymine():
    atom1 = Atom([-2.481, 5.354, 0.000], atom_name="C1′", res_name="T")
    atom2 = Atom([-1.284, 4.500, 0.000], atom_name="N1", res_name="T")

Instances