03cd68309bcb94d8bd760621998cfc851a683fac,cnvlib/segfilters.py,,ampdel,#Any#,31

Before Change

    actionable, usually focal, CNAs. Real and potentially informative but
    lower-level CNAs will be merged together.
    
    return segarr


@require_column("depth")
def bic(segarr):

After Change

    // TODO - handle a/b allele amplifications separately
    //   i.e. don"t merge amplified segments if cn1, cn2 are not the same

    groups = levels.diff().fillna(0).abs().cumsum().astype(int)
    groups += enumerate_chroms(segarr["chromosome"])

    squashed = (segarr.data.assign(group=groups)
                .groupby("group", as_index=False, group_keys=False, sort=False)
                .apply(squash_region))
    return segarr.as_dataframe(squashed)


@require_column("depth")
def bic(segarr):

Instances