3aea1bad7b8bbd2a581924e6884bbbd897f0f831,pynets/pynets_run.py,,,#,16

Before Change

        metavar="Path to mask image",
        default=None,
        help="Optionally specify a thresholded inverse-binarized mask image such as a group ICA-derived network volume, to retain only those network nodes contained within that mask")
    parser.add_argument("-model",
        metavar="Graph estimator",
        default="corr",
        help="Optionally specify matrix estimation type: corr, cov, sps, partcorr, or tangent for correlation, covariance, sparse-inverse covariance, partial correlation, and tangent, respectively")
    parser.add_argument("-confounds",
        metavar="Confounds",
        default=None,
        help="Optionally specify a path to a confound regressor file to improve in the signal estimation for the graph")

After Change

        wf.config["logging"]["interface_level"]="DEBUG"
        //plugin_args = { "n_procs": int(procmem[0]),"memory_gb": int(procmem[1]), "status_callback" : log_nodes_cb}
        plugin_args = { "n_procs": int(procmem[0]),"memory_gb": int(procmem[1])}
        print("\n" + "Running with " + str(plugin_args) + "\n")
        wf.run(plugin="MultiProc", plugin_args= plugin_args)
        //wf.run()

Instances