29db4abdbeb839340ac5b0caf934ebda93892934,cnvlib/commands.py,,,#,1254

Before Change

// export ----------------------------------------------------------------------

P_export = AP_subparsers.add_parser("export",
        help=Convert CNVkit output files to another format.)
P_export_subparsers = P_export.add_subparsers(
        help="Export formats (use with -h for more info).")


// BED special case: multiple samples"s segments, like SEG
def _cmd_export_bed(args):

After Change

P_import_seg.add_argument("-p", "--prefix",
        help=Prefix to add to chromosome names (e.g "chr" to rename "8" in
                the SEG file to "chr8" in the output).)
P_import_seg.add_argument("--from-log10", action="store_true",
        help="Convert base-10 logarithm values in the input to base-2 logs.")
P_import_seg.add_argument("-d", "--output-dir", default=".",
        help="Output directory name.")
P_import_seg.set_defaults(func=_cmd_import_seg)

Instances