2be6f9614d7a11ea88283ce1b4ad363d10c133c2,anvio/taxoestimation.py,SCGsTaxomy,make_list_taxonomy,#SCGsTaxomy#Any#Any#Any#Any#,934

Before Change

    def make_list_taxonomy(self, matrix_pident, matrix, list_position_entry,list_position_ribosomal):
        taxonomy = []
        miniscore = 10000
        i = 0
        while i < len(matrix):
            summist = sum(matrix[i])
            bestident = float(max(matrix_pident[i]))
            bestSCG=list_position_ribosomal[matrix_pident[i].index(bestident)]
            if summist == miniscore:
                taxonomy.append({"bestSCG" : bestSCG,"bestident" : bestident,"taxo" : OrderedDict(self.taxonomy_dict[list_position_entry[i]])})
            if summist < miniscore:
                taxonomy=[]
                taxonomy.append({"bestSCG" : bestSCG,"bestident" : bestident,"taxo" : OrderedDict(self.taxonomy_dict[list_position_entry[i]])})
                miniscore = summist
            i += 1
        return(taxonomy)


    def reduce_assignation_level(self,taxonomy):

After Change

            for name ,some in best:
                print(name, some)
            bestident = matrix[individue].max()
            bestSCG=matrix_pident[individue].sum(axis=1)
            print(best)
            print(summist)
            print(bestident)

Instances