c407f22bb9e27ff5612f4087211bd4c2eccfbbc2,tests/test_estimation.py,,test_timseries_extraction_extract,#Any#,211

Before Change

    dir_path = dir_path_tmp.name

    func_file = tempfile.NamedTemporaryFile(mode="w+", suffix=".nii.gz")
    img_data = np.random.rand(50, 50, 50, 20)
    img = nib.Nifti1Image(img_data, np.eye(4))
    img.to_filename(func_file.name)

    // Create a temp parcel file
    parcels_tmp = tempfile.NamedTemporaryFile(mode="w+", suffix=".nii.gz")
    parcels = np.zeros((50, 50, 50))
    parcels[10:20, 0, 0], parcels[0, 10:20, 0], parcels[0, 0, 10:20] = 1, 2, 3
    nib.Nifti1Image(parcels, np.eye(4)).to_filename(parcels_tmp.name)
    net_parcels_map_nifti_file = parcels_tmp.name

    // Create empty mask file
    mask_tmp = tempfile.NamedTemporaryFile(mode="w+", suffix=".nii.gz")
    mask = np.zeros((50, 50, 50))
    nib.Nifti1Image(parcels, np.eye(4)).to_filename(mask_tmp.name)
    mask = mask_tmp.name

    if conf:

After Change

    dir_path_tmp = tempfile.TemporaryDirectory()
    dir_path = dir_path_tmp.name

    shape1 = (13, 11, 12)
    affine1 = np.eye(4)
    length = 30

    func_img, mask_img = generate_random_img(shape1, affine=affine1,
                                             length=length)

    func_file = tempfile.NamedTemporaryFile(mode="w+", suffix=".nii.gz")
    func_img.to_filename(func_file.name)

Instances