404a8aa3629103140b364ebc69a80f7271af0f04,cellprofiler/modules/rescaleintensity.py,RescaleIntensity,manual_io_range,#RescaleIntensity#Any#Any#,371
Before Change
return rescaled
def manual_io_range(self, input_image, workspace):
data = input_image.pixel_data
mask = numpy.ones_like(data, dtype=numpy.bool)
if input_image.has_mask:
mask = input_image.mask
in_range = self.get_source_range(input_image, workspace)
out_range = (self.dest_scale.min, self.dest_scale.max)
data[~mask ] = 0
rescaled = skimage.exposure.rescale_intensity(data, in_range=in_range, out_range=out_range)
rescaled[~mask] = input_image.pixel_data[~mask]
return rescaled
def divide_by_image_minimum(self, input_image):
"""Divide the image by its minimum to get an illumination correction function"""
After Change
out_range = (self.dest_scale.min, self.dest_scale.max)
return self.rescale(input_image, in_range, out_range)
def divide_by_image_minimum(self, input_image):
"""Divide the image by its minimum to get an illumination correction function"""
In pattern: SUPERPATTERN
Frequency: 3
Non-data size: 13
Instances Project Name: CellProfiler/CellProfiler
Commit Name: 404a8aa3629103140b364ebc69a80f7271af0f04
Time: 2016-12-01
Author: mcquin@broadinstitute.org
File Name: cellprofiler/modules/rescaleintensity.py
Class Name: RescaleIntensity
Method Name: manual_io_range
Project Name: CellProfiler/CellProfiler
Commit Name: 404a8aa3629103140b364ebc69a80f7271af0f04
Time: 2016-12-01
Author: mcquin@broadinstitute.org
File Name: cellprofiler/modules/rescaleintensity.py
Class Name: RescaleIntensity
Method Name: stretch
Project Name: CellProfiler/CellProfiler
Commit Name: 404a8aa3629103140b364ebc69a80f7271af0f04
Time: 2016-12-01
Author: mcquin@broadinstitute.org
File Name: cellprofiler/modules/rescaleintensity.py
Class Name: RescaleIntensity
Method Name: manual_io_range
Project Name: CellProfiler/CellProfiler
Commit Name: 404a8aa3629103140b364ebc69a80f7271af0f04
Time: 2016-12-01
Author: mcquin@broadinstitute.org
File Name: cellprofiler/modules/rescaleintensity.py
Class Name: RescaleIntensity
Method Name: manual_input_range