9f43111758c4f70254c5ce67591569c91671f7bc,bipy/core/sequence.py,NucleotideSequence,NucleotideSequence_1,#,958

Before Change


    iupac_degenerate_characters = set(iupac_degeneracies)
    iupac_characters = iupac_standard_characters | iupac_degenerate_characters
    _complement_map = {}
    _alphabet = iupac_characters | set([c.lower() for c in iupac_characters])

    def _complement(self, seq_iterator):
        Returns `NucleotideSequence` that is complement of `seq_iterator`

After Change


    iupac_degenerate_characters = set(iupac_degeneracies)
    iupac_characters = iupac_standard_characters | iupac_degenerate_characters
    complement_map = {}
    _alphabet = iupac_characters | set(map(str.lower, iupac_characters))

    def _complement(self, seq_iterator):
        Returns `NucleotideSequence` that is complement of `seq_iterator`
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 3

Non-data size: 13

Instances


Project Name: biocore/scikit-bio
Commit Name: 9f43111758c4f70254c5ce67591569c91671f7bc
Time: 2014-03-07
Author: jai.rideout@gmail.com
File Name: bipy/core/sequence.py
Class Name: NucleotideSequence
Method Name: NucleotideSequence_1


Project Name: biocore/scikit-bio
Commit Name: 9f43111758c4f70254c5ce67591569c91671f7bc
Time: 2014-03-07
Author: jai.rideout@gmail.com
File Name: bipy/core/sequence.py
Class Name: DNASequence
Method Name: DNASequence_1


Project Name: biocore/scikit-bio
Commit Name: 9f43111758c4f70254c5ce67591569c91671f7bc
Time: 2014-03-07
Author: jai.rideout@gmail.com
File Name: bipy/core/sequence.py
Class Name: RNASequence
Method Name: RNASequence_1