bed3f1ebd41020f9bbd31ba30b78902775eddbc8,plantcv/plantcv/morphology/segment_euclidean_length.py,,segment_euclidean_length,#Any#Any#Any#,18

Before Change

        // Calculate euclidean distance between tips of each contour
        segment_lengths.append(euclidean(points[0], points[1]))

    eu_length_header = ["HEADER_EU_LENGTH"]
    eu_length_data = ["EU_LENGTH_DATA"]
    // Put labels of length
    for c, value in enumerate(segment_lengths):
        text = "{:.2f}".format(value)
        w = x_list[c]
        h = y_list[c]
        cv2.putText(img=labeled_img, text=text, org=(w, h), fontFace=cv2.FONT_HERSHEY_SIMPLEX, fontScale=.4,
                    color=(150, 150, 150), thickness=1)
        segment_label = "ID" + str(c)
        eu_length_header.append(segment_label)
        eu_length_data.append(segment_lengths[c])

    if "morphology_data" not in outputs.measurements:
        outputs.measurements["morphology_data"] = {}
    outputs.measurements["morphology_data"]["segment_eu_lengths"] = segment_lengths

    // Reset debug mode
    params.debug = debug
    // Auto-increment device
    params.device += 1

    if params.debug == "print":
        print_image(labeled_img, os.path.join(params.debug_outdir, str(params.device) + "_segment_eu_lengths.png"))
    elif params.debug == "plot":
        plot_image(labeled_img)

    return eu_length_header, eu_length_data, labeled_img

After Change

        // Calculate euclidean distance between tips of each contour
        segment_lengths.append(euclidean(points[0], points[1]))

    segment_ids = []
    // Put labels of length
    for c, value in enumerate(segment_lengths):
        text = "{:.2f}".format(value)
        w = x_list[c]
        h = y_list[c]
        cv2.putText(img=labeled_img, text=text, org=(w, h), fontFace=cv2.FONT_HERSHEY_SIMPLEX, fontScale=.4,
                    color=(150, 150, 150), thickness=1)
        segment_label = "ID" + str(c)
        segment_ids.append(c)

    outputs.add_measurement(variable="segment_eu_length", trait="segment_eu_length",
                            method="plantcv.plantcv.morphology.segment_euclidean_length", scale="pixels", datatype=list,
                            value=segment_lengths, label=segment_ids)

    // Reset debug mode
    params.debug = debug
    // Auto-increment device

Instances