c6f415ebddd6f765e1d5e508aaddba0c38fa392a,skbio/core/sequence.py,NucleotideSequence,iupac_degeneracies,#Any#,1015

Before Change

            non-degenerate IUPAC nucleotide characters it represents.

        
        return {
            "R": set("AG"), "Y": set("CTU"), "M": set("AC"), "K": set("TUG"),
            "W": set("ATU"), "S": set("GC"), "B": set("CGTU"),
            "D": set("AGTU"), "H": set("ACTU"), "V": set("ACG"),
            "N": set("ACGTU")
        }

    @classmethod
    def iupac_degenerate_characters(cls):
        Return the degenerate IUPAC nucleotide characters.

After Change

            non-degenerate IUPAC nucleotide characters it represents.

        
        degen_map = {
            "R": set("AG"), "Y": set("CTU"), "M": set("AC"), "K": set("TUG"),
            "W": set("ATU"), "S": set("GC"), "B": set("CGTU"),
            "D": set("AGTU"), "H": set("ACTU"), "V": set("ACG"),
            "N": set("ACGTU")
        }

        for degen_char in degen_map.keys():
            nondegen_chars = degen_map[degen_char]
            degen_map[degen_char.lower()] = set(
                "".join(nondegen_chars).lower())

        return degen_map

    @classmethod
    def iupac_degenerate_characters(cls):
        Return the degenerate IUPAC nucleotide characters.

Instances