ade52a2d1afe22bdff0ac28b65e5b5cfdd03dd44,pynets/registration/register.py,DmriReg,__init__,#DmriReg#Any#Any#Any#Any#Any#Any#,343

Before Change

        self.input_mni_mask = "%s%s%s%s" % (FSLDIR, "/data/standard/MNI152_T1_", vox_size, "_brain_mask.nii.gz")
        self.wm_gm_int_in_dwi = "%s%s%s%s" % (self.reg_path_img, "/", self.t1w_name, "_wm_gm_int_in_dwi.nii.gz")
        self.wm_gm_int_in_dwi_bin = "%s%s%s%s" % (self.reg_path_img, "/", self.t1w_name, "_wm_gm_int_in_dwi_bin.nii.gz")
        self.input_mni_sched = "%s%s" % (FSLDIR, "/etc/flirtsch/T1_2_MNI152_2mm.cnf")

        // Create empty tmp directories that do not yet exist
        reg_dirs = [self.tmp_path, self.reg_path, self.anat_path, self.reg_path_mat, self.reg_path_warp,
                    self.reg_path_img]

After Change

        self.vent_mask_t1w = "%s%s" % (self.reg_path_img, "/vent_mask_t1w.nii.gz")
        self.mni_atlas = pkg_resources.resource_filename("pynets", "atlases/HarvardOxford-sub-prob-" + vox_size +
                                                         ".nii.gz")
        self.input_mni = pkg_resources.resource_filename("pynets", "templates/MNI152_T1_" + vox_size + ".nii.gz")
        self.input_mni_brain = pkg_resources.resource_filename("pynets", "templates/MNI152_T1_" + vox_size +
                                                               "_brain.nii.gz")
        self.input_mni_mask = pkg_resources.resource_filename("pynets", "templates/MNI152_T1_" + vox_size +
                                                              "_brain_mask.nii.gz")
        self.wm_gm_int_in_dwi = "%s%s%s%s" % (self.reg_path_img, "/", self.t1w_name, "_wm_gm_int_in_dwi.nii.gz")
        self.wm_gm_int_in_dwi_bin = "%s%s%s%s" % (self.reg_path_img, "/", self.t1w_name, "_wm_gm_int_in_dwi_bin.nii.gz")

        // Create empty tmp directories that do not yet exist

Instances