ac052d8737d28287040445e119b1d8c8d8cd1519,doc/examples/scripts/sequence/avidin_alignment.py,,,#,22

Before Change

                                 gap_penalty=(-10, -1), terminal_penalty=False)
// Draw first and only alignment
// The color intensity indicates the similiarity
vis = graphics.AlignmentSimilarityVisualizer(
    alignments[0], matrix=matrix)
vis.add_labels(labels=["Avidin", "Streptavidin"])
vis.add_location_numbers()
vis.set_alignment_properties(symbols_per_line=40)
fig = vis.generate()
plt.show()

After Change

                                 gap_penalty=(-10, -1), terminal_penalty=False)
// Draw first and only alignment
// The color intensity indicates the similiarity
fig = plt.figure(figsize=(8.0, 2.5))
ax = fig.add_subplot(111)
graphics.plot_alignment_similarity_based(
    ax, alignments[0], matrix=matrix, labels=["Avidin", "Streptavidin"],
    show_numbers=True, show_line_position=True
)
fig.tight_layout()

plt.show()

Instances