12cd0759c82480173978bbeeb8ef9ec5829e6542,deepchem/models/tests/test_generalize.py,TestGeneralization,test_sklearn_transformed_regression,#TestGeneralization#,83
Before Change
for transformer in transformers:
transformer.transform(test_dataset)
tasks = train_dataset.get_task_names()
task_types = {task: "regression" for task in tasks}
model_params = {
"batch_size": None,
"data_shape": train_dataset.get_data_shape()
}
verbosity = "high"
regression_metric = Metric(metrics.r2_score, verbosity=verbosity)
model = SklearnModel(tasks, task_types, model_params, self.model_dir,
mode="regression",
model_instance=LinearRegression())
// Fit trained model
model.fit(train_dataset)
model.save()
train_evaluator = Evaluator(model, train_dataset, transformers, verbosity=verbosity)
train_scores = train_evaluator.compute_model_performance([regression_metric])
print("train_scores")
print(train_scores)
assert train_scores[regression_metric.name] > .5
// Eval model on test
transformers = []
evaluator = Evaluator(model, test_dataset, transformers, verbosity=verbosity)
scores = evaluator.compute_model_performance([regression_metric])
print("scores")
print(scores)
assert scores[regression_metric.name] > .5
def test_sklearn_multitask_regression(self):
After Change
verbosity = "high"
regression_metric = Metric(metrics.r2_score, verbosity=verbosity)
sklearn_model = LinearRegression()
model = SklearnModel(sklearn_model, self.model_dir)
// Fit trained model
model.fit(train_dataset)
model.save()
In pattern: SUPERPATTERN
Frequency: 3
Non-data size: 16
Instances
Project Name: deepchem/deepchem
Commit Name: 12cd0759c82480173978bbeeb8ef9ec5829e6542
Time: 2016-09-19
Author: bharath.ramsundar@gmail.com
File Name: deepchem/models/tests/test_generalize.py
Class Name: TestGeneralization
Method Name: test_sklearn_transformed_regression
Project Name: deepchem/deepchem
Commit Name: 12cd0759c82480173978bbeeb8ef9ec5829e6542
Time: 2016-09-19
Author: bharath.ramsundar@gmail.com
File Name: deepchem/models/tests/test_generalize.py
Class Name: TestGeneralization
Method Name: test_sklearn_transformed_regression
Project Name: deepchem/deepchem
Commit Name: 12cd0759c82480173978bbeeb8ef9ec5829e6542
Time: 2016-09-19
Author: bharath.ramsundar@gmail.com
File Name: deepchem/models/tests/test_generalize.py
Class Name: TestGeneralization
Method Name: test_sklearn_classification
Project Name: deepchem/deepchem
Commit Name: 12cd0759c82480173978bbeeb8ef9ec5829e6542
Time: 2016-09-19
Author: bharath.ramsundar@gmail.com
File Name: deepchem/models/tests/test_generalize.py
Class Name: TestGeneralization
Method Name: test_sklearn_regression