d683b78f2e959ed1cf40a5325175a1baa201d111,deepvariant/labeler/variant_labeler.py,,_genotype_from_matched_truth,#Any#Any#,149
Before Change
if truth_variant is None:
raise ValueError("truth_variant cannot be None")
// redacted
if not (truth_variant.calls and
any(gt >= 0 for gt in truth_variant.calls[0].genotype)) :
raise ValueError("truth_variant needs genotypes to be used for labeling",
truth_variant)
After Change
raise ValueError("candidate_variant cannot be None")
if truth_variant is None:
raise ValueError("truth_variant cannot be None")
if not variantcall_utils.has_genotypes(
variant_utils.only_call(truth_variant)) :
raise ValueError("truth_variant needs genotypes to be used for labeling",
truth_variant)
In pattern: SUPERPATTERN
Frequency: 3
Non-data size: 16
Instances Project Name: google/deepvariant
Commit Name: d683b78f2e959ed1cf40a5325175a1baa201d111
Time: 2018-03-12
Author: cym@google.com
File Name: deepvariant/labeler/variant_labeler.py
Class Name:
Method Name: _genotype_from_matched_truth
Project Name: google/deepvariant
Commit Name: d683b78f2e959ed1cf40a5325175a1baa201d111
Time: 2018-03-12
Author: cym@google.com
File Name: deepvariant/labeler/variant_labeler.py
Class Name:
Method Name: _genotype_from_matched_truth
Project Name: google/deepvariant
Commit Name: d683b78f2e959ed1cf40a5325175a1baa201d111
Time: 2018-03-12
Author: cym@google.com
File Name: deepvariant/labeler/positional_labeler.py
Class Name:
Method Name: _genotype_from_matched_truth
Project Name: google/deepvariant
Commit Name: d683b78f2e959ed1cf40a5325175a1baa201d111
Time: 2018-03-12
Author: cym@google.com
File Name: deepvariant/labeler/labeled_examples_to_vcf.py
Class Name:
Method Name: examples_to_variants