7da447b4b42c4b214fc464deb3a3166a9bace7b2,scanpy/plotting/__init__.py,,pca_ranking,#Any#Any#Any#,103
Before Change
if isinstance(comps, str): comps = comps.split(",")
keys = ["PC1", "PC2", "PC3"] if comps is None else ["PC{}".format(c) for c in comps]
ranking(adata, "var", keys)
writekey = sett.basekey + "_pca_ranking_components" + sett.plotsuffix
if sett.savefigs: savefig(writekey)
ranking(adata, "add", "pca_variance_ratio", labels="PC")
writekey = sett.basekey + "_pca_ranking_variance" + sett.plotsuffix
show = sett.autoshow if show is None else show
if sett.savefigs: savefig(writekey)
elif show: pl.show()
def diffmap(adata,
color=None,
names=None,
comps=None,
After Change
ranking(adata, "var", keys)
if sett.savefigs: savefig("pca_ranking_components")
ranking(adata, "add", "pca_variance_ratio", labels="PC")
savefig_or_show("pca_ranking_variance")
def diffmap(adata,
color=None,
In pattern: SUPERPATTERN
Frequency: 3
Non-data size: 16
Instances
Project Name: theislab/scanpy
Commit Name: 7da447b4b42c4b214fc464deb3a3166a9bace7b2
Time: 2017-05-22
Author: f.alex.wolf@gmx.de
File Name: scanpy/plotting/__init__.py
Class Name:
Method Name: pca_ranking
Project Name: theislab/scanpy
Commit Name: 7da447b4b42c4b214fc464deb3a3166a9bace7b2
Time: 2017-05-22
Author: f.alex.wolf@gmx.de
File Name: scanpy/plotting/__init__.py
Class Name:
Method Name: pca_ranking
Project Name: theislab/scanpy
Commit Name: 7da447b4b42c4b214fc464deb3a3166a9bace7b2
Time: 2017-05-22
Author: f.alex.wolf@gmx.de
File Name: scanpy/plotting/__init__.py
Class Name:
Method Name: tsne
Project Name: theislab/scanpy
Commit Name: 7da447b4b42c4b214fc464deb3a3166a9bace7b2
Time: 2017-05-22
Author: f.alex.wolf@gmx.de
File Name: scanpy/plotting/__init__.py
Class Name:
Method Name: pca_scatter