be0741574fca5a189473a47eb8c600c5822992a3,skbio/stats/ordination/tests/test_ordination.py,TestCCAResults,setup,#TestCCAResults#,459

Before Change

        Data from table 11.3 in Legendre & Legendre 1998
        (p. 590). Loaded results as computed with vegan 2.0-8 and
        compared with table 11.5 if also there.
        self.Y = np.loadtxt(get_data_path("example3_Y"))
        self.X = np.loadtxt(get_data_path("example3_X"))[:, :-1]
        self.site_ids = ["Site0", "Site1", "Site2", "Site3", "Site4",
                         "Site5", "Site6", "Site7", "Site8", "Site9"]
        self.species_ids = ["Species0", "Species1", "Species2", "Species3",

After Change

        Data from table 11.3 in Legendre & Legendre 1998
        (p. 590). Loaded results as computed with vegan 2.0-8 and
        compared with table 11.5 if also there.
        self.Y = pd.DataFrame(
            np.loadtxt(get_data_path("example3_Y")),
            columns=["Feature0", "Feature1", "Feature2", "Feature3",
                     "Feature4", "Feature5", "Feature6", "Feature7",
                     "Feature8"],
            index=["Sample0", "Sample1", "Sample2", "Sample3", "Sample4",
                   "Sample5", "Sample6", "Sample7", "Sample8", "Sample9"])
        self.X = pd.DataFrame(
            np.loadtxt(get_data_path("example3_X")),
            columns=["Constraint0", "Constraint1",
                     "Constraint2", "Constraint3"],

Instances