889d2fb5679c6f7cbd5ed91428242edb5f497d95,anvio/profiler.py,BAMProfiler,generate_variabile_codons_table,#BAMProfiler#,292

Before Change

                    entries = zip(*split.SCV_profiles[gene_callers_id].values())

                    for entry in entries:
                        entry_dict = dict(zip(split.SCV_profiles[gene_callers_id].keys(), entry))
                        variable_codons_table.append(entry_dict)

        variable_codons_table.store()

After Change

                for gene_callers_id in split.SCV_profiles:

                    // We reorder to the profiles in the order they will appear in the output table
                    split.SCV_profiles[gene_callers_id] = OrderedDict(
                        [(col, split.SCV_profiles[gene_callers_id][col]) for col in t.variable_codons_table_structure[1:]]
                    )

                    entries = zip(*split.SCV_profiles[gene_callers_id].values())
                    for entry in entries:
                        self.variable_codons_table.append(entry)

Instances