2b4c67c9cd2f08c1ba784eb17ebff02fb34b55d6,anvio/structureops.py,PDBDatabase,_run,#PDBDatabase#,1366

Before Change

        output_queue = manager.Queue(self.queue_size)

        // Consider only PDB ids that aren"t already stored
        pdb_ids = self.get_representative_ids(self.clusters).difference(self.get_stored_structure_ids())

        num_structures = len(pdb_ids)

After Change

        // NOTE We store as list so order is retained when debugging
        pdb_ids = [
            pdb_id
            for pdb_id in self.get_representative_ids(self.clusters)
            if pdb_id not in self.get_stored_structure_ids()
        ]

        num_structures = len(pdb_ids)

Instances