d6cfffd01a2a3129739c6e76f9d966287b20b7c5,bin/basenji_predict.py,,main,#,40

Before Change

    sess.run(test_init_op)
    test_preds = model.predict_tfr(sess, sample=options.sample_down)

    np.save("%s/preds.npy" % options.out_dir, test_preds)

    // print normalization factors
    target_means = test_preds.mean(axis=(0,1), dtype="float64")
    target_means_median = np.median(target_means)

After Change

    sess.run(test_init_op)
    test_preds = model.predict_tfr(sess, sample=options.sample_down)

    preds_h5 = h5py.File("%s/preds.h5" % options.out_dir, "w")
    preds_h5.create_dataset("preds", data=test_preds)
    preds_h5.close()

    // print normalization factors
    target_means = test_preds.mean(axis=(0,1), dtype="float64")
    target_means_median = np.median(target_means)

Instances