d64b3e882f106f19ea02a5a6066e60a9c0616c5b,pynets/core/utils.py,,make_gtab_and_bmask,#Any#Any#Any#Any#Any#Any#,1413

Before Change

    for b0 in b0s:
        print(b0)
        b0_bbr = "{}/{}_b0.nii.gz".format(namer_dir, str(b0))
        cmds.append("fslroi {} {} {} 1".format(dwi_file, b0_bbr, str(b0), " 1"))
        b0s_bbr.append(b0_bbr)

    for cmd in cmds:

After Change

    // Extract and Combine all b0s collected
    print("Extracting b0\"s...")
    b0_vols = []
    dwi_img = nib.load(dwi_file)
    dwi_data = dwi_img.get_data()
    for b0 in b0s:
        print(b0)
        b0_vols.append(dwi_data[:, :, :, b0])

Instances