80f136b09da96e3f670dd0f7f2e0b7b923fdcde1,anvio/workflows/metagenomics/__init__.py,MetagenomicsWorkflow,init_target_files,#MetagenomicsWorkflow#,193

Before Change

        // We only merge things if there are multiple samples in the same group
        merged_profiles = [os.path.join(self.dirs_dict["MERGE_DIR"], g, "PROFILE.db") \
                            for g in self.group_names if self.group_sizes[g] > 1]
        target_files.extend(merged_profiles)

        // for groups of size 1 we create a message file
        message_file_for_groups_of_size_1 = [os.path.join(self.dirs_dict["MERGE_DIR"], g, "README.txt") \
                            for g in self.group_names if self.group_sizes[g] == 1]

After Change

                                                            self.samples_information.loc[self.samples_information["group"]==group,"sample"].values[0],
                                                            "PROFILE.db")

        target_files.extend(list(self.profile_databases.values()))

        // for groups of size 1 we create a message file
        message_file_for_groups_of_size_1 = [os.path.join(self.dirs_dict["MERGE_DIR"], g, "README.txt") \

Instances