d17eed386f23ad30c1f5f9df9d35d2e627f6d1d0,anvio/bamops.py,LinkMers,list_contigs,#LinkMers#,364

Before Change

    def list_contigs(self):
        self.progress.new("Init")
        self.progress.update("Reading BAM File")
        bam_file_object = BAMFileObject(self.input_file_paths[0]).get()
        self.progress.end()

        contig_names = bam_file_object.references
        contig_lengths = bam_file_object.lengths

After Change

    def list_contigs(self):
        self.progress.new("Init")
        self.progress.update("Reading BAM File")
        bam_file_object = BAMFileObject(self.input_file_paths[0])
        self.progress.end()

        contig_names = bam_file_object.references
        contig_lengths = bam_file_object.lengths

Instances