06ac55c2da7b0313e7edbba742ec44e03734565e,utilities/volume_reader.py,VolumePreprocessor,normalise_subject_data_and_save,#VolumePreprocessor#Any#,132

Before Change

            data_dict = self.standardisor.normalise_data(data_dict, mask_dict)
            for mod in mask_dict.keys():
                name_norm_save = io.create_new_filename(
                    subject.file_path_dict[mod],
                    new_path=self.dict_normalisation.path_to_save,
                    new_prefix="Norm")
                io.save_img(data_dict[mod], subject.name, [], name_norm_save,

After Change

        if self.flags.flag_standardise:
            data_dict = subject.read_all_modalities(self.flags.flag_reorient,
                                                    self.flags.flag_resample)
            data_dict.input = np.nan_to_num(data_dict.input)
            mask_array = self.make_mask_array(data_dict.input)
            data_dict.input = self.standardisor.normalise_data_array(
                data_dict.input, mask_array)
            name_norm_save = io.create_new_filename(
                subject.name + ".nii.gz",

Instances