a45765f7ef1e938108a37d11f031e36e764b8032,skbio/io/fastq.py,,_generator_to_fastq,#Any#Any#Any#Any#Any#Any#,380

Before Change

        if phred_offset not in [33, 64]:
            raise ValueError("Unknown PHRED offset of %s" % phred_offset)

        if enforce_qual_range and ((seq.quality < 0).any() or
                                   (seq.quality > 62).any()):
            raise FASTQFormatError("Failed qual conversion for seq id: %s."
                                   "This may be because you passed an "
                                   "incorrect value for phred_offset" %
                                   seq.id)

        qual = seq.quality+phred_offset
        qual_str = "".join(map(chr, qual))

        fh.write("@%s\n%s\n+%s\n%s\n" % (header, seq_str, header, qual_str))

After Change

        else:
            header = id_

        if not seq.has_quality():
            raise FASTQFormatError(
                "Cannot write %s biological sequence in FASTQ format because "
                "it does not have quality scores associated with it." %
                cardinal_to_ordinal(idx + 1))
        qual_str = _encode_phred_to_qual(seq.quality, variant=variant,
                                         phred_offset=phred_offset)

        fh.write("@")

Instances