c56502495fe023f3fd918bdaf705fa857f0b7c5c,src/biotite/sequence/io/fasta/convert.py,,_convert_to_sequence,#Any#,181

Before Change


    except AlphabetError:
        pass
    try:
        return ProteinSequence(seq_str)
    except AlphabetError:
        raise ValueError("FASTA data cannot be converted either to "
                         "NucleotideSequence nor to Protein Sequence")

After Change


        code = ProteinSequence.alphabet.encode_multiple(seq_str)
        seq = ProteinSequence()
        seq.code = code
        return seq
    except AlphabetError:
        pass
    try:
        code = NucleotideSequence.alphabet_amb.encode_multiple(seq_str)
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 3

Non-data size: 3

Instances


Project Name: biotite-dev/biotite
Commit Name: c56502495fe023f3fd918bdaf705fa857f0b7c5c
Time: 2018-06-21
Author: patrick.kunzm@gmail.com
File Name: src/biotite/sequence/io/fasta/convert.py
Class Name:
Method Name: _convert_to_sequence


Project Name: biotite-dev/biotite
Commit Name: f4d2e082c97532863a01c89432164e23977c6108
Time: 2020-09-16
Author: patrick.kunzm@gmail.com
File Name: src/biotite/sequence/io/fasta/convert.py
Class Name:
Method Name: _convert_to_sequence


Project Name: biotite-dev/biotite
Commit Name: ebf130728a857583c9d4c900e0e3f39718685d43
Time: 2019-05-24
Author: patrick.kunzm@gmail.com
File Name: src/biotite/sequence/io/genbank/sequence.py
Class Name:
Method Name: get_sequence