9a8901f72fa93fe0bb5f60ca47161fe9622c0189,doc/examples/scripts/structure/ku_superimposition.py,,,#,28

Before Change

ku_file     = NamedTemporaryFile("w", suffix=".cif")

// Download and parse structure files
file = rcsb.fetch("1JEY", "mmtf", biotite.temp_dir())
ku_dna = strucio.load_structure(file)
file = rcsb.fetch("1JEQ", "mmtf", biotite.temp_dir())
ku = strucio.load_structure(file)
// Remove DNA and water

After Change

    pdbx.PDBxFile.read(rcsb.fetch("1JEY", "mmtf")), model=1
)
ku = pdbx.get_structure(
    pdbx.PDBxFile.read(rcsb.fetch("1JEQ", "mmtf")), model=1
)
// Remove DNA and water
ku_dna = ku_dna[(ku_dna.chain_id == "A") | (ku_dna.chain_id == "B")]

Instances