0c1fa4c336e09956e5ca82081c1afbd8807b778d,cnvlib/autobin.py,,hybrid,#Any#Any#Any#Any#Any#,94

Before Change


    
    // Only examine chromosomes present in all 2-3 input datasets
    ok_chroms = shared_chroms(rc_table, targets, access)
    rc_table = rc_table[rc_table.chromosome.isin(ok_chroms)]
    targets = targets[targets.chromosome.isin(ok_chroms)]
    // Identify off-target regions
    if access is None:
        access = idxstats2ga(rc_table)

After Change


        access = idxstats2ga(rc_table)
    antitargets = access.subtract(targets)
    // Only examine chromosomes present in all 2-3 input datasets
    rc_table, targets, antitargets = shared_chroms(rc_table, targets,
                                                   antitargets)
    // Deal with targets
    target_depth = sample_region_cov(bam_fname, targets)
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 4

Non-data size: 3

Instances


Project Name: etal/cnvkit
Commit Name: 0c1fa4c336e09956e5ca82081c1afbd8807b778d
Time: 2017-03-03
Author: eric.talevich@gmail.com
File Name: cnvlib/autobin.py
Class Name:
Method Name: hybrid


Project Name: etal/cnvkit
Commit Name: c264a73e401d5d030ee7ca510e2db7004418b469
Time: 2017-09-15
Author: eric.talevich@gmail.com
File Name: scripts/cn_ztest.py
Class Name:
Method Name:


Project Name: WZBSocialScienceCenter/tmtoolkit
Commit Name: 6ddfab1ac6105dddabc8463866f988645ed0d9c4
Time: 2019-07-26
Author: markus.konrad@wzb.eu
File Name: tmtoolkit/preprocess/_preprocworker.py
Class Name: PreprocWorker
Method Name: _task_filter_for_pos


Project Name: rusty1s/pytorch_geometric
Commit Name: 307e94868750f515472c3bc7e5d6cbfd51b5eff6
Time: 2019-08-15
Author: matthias.fey@tu-dortmund.de
File Name: test/utils/test_negative_sampling.py
Class Name:
Method Name: test_negative_sampling