7daa0de48a49cebb9c6965f077fdd88aebbbf40d,hicexplorer/hicChangeMatrixType.py,,main,#Any#,98

Before Change

    if args.chromosomes:
        hic_ma.keepOnlyTheseChr(args.chromosomes)

    length_chromosome_dict = {}
    for chrname in hic_ma.getChrNames():
        chr_range = hic_ma.getChrBinRange(chrname)
        length_chromosome_dict[chrname] = chr_range[1] - chr_range[0]
    
    if args.obs_exp:
        trasf_matrix = lil_matrix(hic_ma.matrix.shape)

After Change

        hic_ma.keepOnlyTheseChr(args.chromosomes)

    length_chromosome = 0
    chromosome_count = len(hic_ma.getChrNames())
    for chrname in hic_ma.getChrNames():
        chr_range = hic_ma.getChrBinRange(chrname)
        length_chromosome += chr_range[1] - chr_range[0]

Instances