ebd36d3cad0d6daa604e93ed43a7a0c3b7250baf,skbio/io/fastq.py,,_fastq_to_nucleotide_sequence,#Any#Any#Any#Any#,340

Before Change

@register_reader("fastq", NucleotideSequence)
def _fastq_to_nucleotide_sequence(fh, variant=None, phred_offset=None,
                                  seq_num=1):
    return _fastq_to_sequence(fh, variant, phred_offset, seq_num,
                              NucleotideSequence)


@register_reader("fastq", DNASequence)
def _fastq_to_dna_sequence(fh, variant=None, phred_offset=None, seq_num=1):

After Change

@register_reader("fastq", NucleotideSequence)
def _fastq_to_nucleotide_sequence(fh, variant=None, phred_offset=None,
                                  seq_num=1):
    return _get_nth_sequence(
        _fastq_to_generator(fh, variant=variant, phred_offset=phred_offset,
                            constructor=NucleotideSequence),
        seq_num)


@register_reader("fastq", DNASequence)
def _fastq_to_dna_sequence(fh, variant=None, phred_offset=None, seq_num=1):

Instances