d38f74b2e0b8a44df58a3109b056d657bf77f8b6,cnvlib/reference.py,,combine_probes,#Any#Any#Any#Any#Any#Any#Any#Any#,118

Before Change

                and (cnarr1.chromosome == cnarrx.chromosome).all()
                and (cnarr1.start == cnarrx.start).all()
                and (cnarr1.end == cnarrx.end).all()
                and (cnarr1["gene"] == cnarrx["gene"]).all()):
            raise RuntimeError("%s bins do not match those in %s"
                               % (fname, filenames[0]))
        all_depths.append(cnarrx["depth"] if "depth" in cnarrx

After Change

        logging.info("Loading target %s", fname)
        cnarrx = read_cna(fname)
        // Bin information should match across all files
        if not np.array_equal(
                cnarr1.loc[:, ("chromosome", "start", "end", "gene")].values,
                cnarrx.loc[:, ("chromosome", "start", "end", "gene")].values):
            raise RuntimeError("%s bins do not match those in %s"
                               % (fname, filenames[0]))
        all_depths.append(cnarrx["depth"] if "depth" in cnarrx

Instances