0f5b91a6c6ebd0dc657043843a81d6683032e174,skbio/sequence/_iupac_sequence.py,IUPACSequence,nondegenerates,#IUPACSequence#,223

Before Change

                // membership on the assumption that an exception is rarely
                // thrown.
                try:
                    expansions.append(degen_chars[char])
                except KeyError:
                    raise SequenceError(
                        "Sequence contains an invalid character: %s" % char)

After Change

        return bool(self.degenerates().any())

    def nondegenerates(self):
        return np.in1d(self._bytes, self._nondegenerate_codes)

    def has_nondegenerates(self):
        return bool(self.nondegenerates().any())

Instances