6d19438fd070fc8746661581214130c1ea9869eb,anvio/contigops.py,Auxiliary,__init__,#Auxiliary#Any#Any#Any#Any#Any#,152

Before Change


        self.report_variability_full = report_variability_full

        self.SNV_profiles = {}
        self.SCV_profiles = {}
        self.reference_codon_sequences = {}

        self.nt_to_array_index = {nt: i for i, nt in enumerate(constants.nucleotides)}
        self.cdn_to_array_index = {cdn: i for i, cdn in enumerate(constants.codons)}

After Change


    def __init__(self, split, min_coverage=10, report_variability_full=False, profile_SCVs=False, skip_SNV_profiling=False):

        if anvio.DEBUG:
            self.run = terminal.Run()

        self.split = split
        self.variation_density = 0.0
        self.min_coverage = min_coverage
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 3

Non-data size: 3

Instances


Project Name: merenlab/anvio
Commit Name: 6d19438fd070fc8746661581214130c1ea9869eb
Time: 2020-02-26
Author: kiefl.evan@gmail.com
File Name: anvio/contigops.py
Class Name: Auxiliary
Method Name: __init__


Project Name: mlflow/mlflow
Commit Name: 63d0406048adfce5b41fb841587385e753685e50
Time: 2019-05-28
Author: 39497902+dbczumar@users.noreply.github.com
File Name: tests/entities/test_run.py
Class Name: TestRun
Method Name: test_creation_and_hydration


Project Name: GoogleCloudPlatform/PerfKitBenchmarker
Commit Name: 8deb16da1aeb4c100a03948b7b444af276634fad
Time: 2017-08-30
Author: ehankland@google.com
File Name: perfkitbenchmarker/linux_packages/ycsb.py
Class Name: YCSBExecutor
Method Name: LoadAndRun