b0f6563b74196ab0f83c54cc315f2efe18b4d05b,pynets/registration/reg_utils.py,,atlas2t1w_align,#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#,462

Before Change

    if diff > gm_fail_tol:
        print(f"Grey-Matter mask too restrictive >{str(gm_fail_tol)} for this "
              f"parcellation. Falling back to the T1w mask...")
        os.system(
            f"fslmaths {aligned_atlas_skull} -mas {t1w_brain_mask} "
            f"{aligned_atlas_gm}"
        )
    template_img.uncache()
    atlas_img_orig.uncache()
    atlas_img.uncache()
    atlas_img_corr.uncache()

After Change

    if diff > gm_fail_tol:
        print(f"Grey-Matter mask too restrictive >{str(gm_fail_tol)} for this "
              f"parcellation. Falling back to the T1w mask...")
        aligned_atlas_gm = regutils.apply_mask_to_image(aligned_atlas_skull,
                                                        t1w_brain_mask,
                                                        aligned_atlas_gm)

    template_img.uncache()
    atlas_img_orig.uncache()
    atlas_img.uncache()

Instances