34d621b7f00c1cd42f34eeae1443c24563786fc3,anvio/tables/hmmhits.py,TablesForHMMHits,populate_search_tables,#TablesForHMMHits#Any#,69

Before Change

                parser = parser_modules["search"]["hmmscan"](hmm_scan_hits_txt, alphabet=alphabet, context=context)
                search_results_dict = parser.get_search_results()

            if not len(search_results_dict):
                run.info_single("The HMM source "%s" returned 0 hits. SAD (but it"s stil OK)." % source, nl_before=1)


            if context == "CONTIG":
                // we are in trouble here. because our search results dictionary contains no gene calls, but contig
                // names that contain our hits. on the other hand, the rest of the code outside of this if statement
                // expects a `search_results_dict` with gene callers id in it. so there are two things we need to do

After Change

                                                           rna_alphabet=True if alphabet=="RNA" else False,
                                                           split_parts=self.num_threads_to_use)

        table_write_lock = Lock()

        def hmm_worker(part_no, source):
            copy_target_files_dict = copy.deepcopy(target_files_dict)

Instances