8d8c13451b84d5386bc30087b6519ee4e13bb21f,tests/preprocessing/test_labelers.py,TestLabelers,setUp,#TestLabelers#,8

Before Change

class TestLabelers(unittest.TestCase):
    def setUp(self):
        self.dataset = Dataset()
        doc = Document()
        part = Part("some text ... (c.2708_2711delTTAG, p.V903GfsX905) ... text")
        self.dataset.documents["doc_1"] = doc
        doc.parts["part_1"] = part
        from nala.preprocessing.spliters import NLTKSplitter

After Change

        self.dataset = StringReader("some text ... (c.2708_2711delTTAG, p.V903GfsX905) ... text").read()
        NLTKSplitter().split(self.dataset)
        TmVarTokenizer().tokenize(self.dataset)
        part = list(self.dataset.parts())[0]
        part.annotations.append(Annotation(MUT_CLASS_ID, 15, "c.2708_2711delTTAG"))
        part.annotations.append(Annotation(MUT_CLASS_ID, 35, "p.V903GfsX905"))

    def test_bio_labeler(self):

Instances