c80c7dff5ca3c602dd274384378109d7f021e21c,skbio/io/fasta.py,,_fasta_to_nucleotide_sequence,#Any#Any#Any#,646

Before Change



@register_reader("fasta", NucleotideSequence)
def _fasta_to_nucleotide_sequence(fh, qual=FileSentinel, seq_num=1):
    return _fasta_to_sequence(fh, qual, seq_num, NucleotideSequence)


@register_reader("fasta", DNASequence)
def _fasta_to_dna_sequence(fh, qual=FileSentinel, seq_num=1):

After Change



@register_reader("fasta", NucleotideSequence)
def _fasta_to_nucleotide_sequence(fh, qual=FileSentinel, seq_num=1):
    return _get_nth_sequence(
        _fasta_to_generator(fh, qual=qual, constructor=NucleotideSequence),
        seq_num)


@register_reader("fasta", DNASequence)
def _fasta_to_dna_sequence(fh, qual=FileSentinel, seq_num=1):
Italian Trulli
In pattern: SUPERPATTERN

Frequency: 5

Non-data size: 3

Instances


Project Name: biocore/scikit-bio
Commit Name: c80c7dff5ca3c602dd274384378109d7f021e21c
Time: 2014-10-25
Author: jai.rideout@gmail.com
File Name: skbio/io/fasta.py
Class Name:
Method Name: _fasta_to_nucleotide_sequence


Project Name: biocore/scikit-bio
Commit Name: c80c7dff5ca3c602dd274384378109d7f021e21c
Time: 2014-10-25
Author: jai.rideout@gmail.com
File Name: skbio/io/fasta.py
Class Name:
Method Name: _fasta_to_protein_sequence


Project Name: biocore/scikit-bio
Commit Name: c80c7dff5ca3c602dd274384378109d7f021e21c
Time: 2014-10-25
Author: jai.rideout@gmail.com
File Name: skbio/io/fasta.py
Class Name:
Method Name: _fasta_to_biological_sequence


Project Name: biocore/scikit-bio
Commit Name: c80c7dff5ca3c602dd274384378109d7f021e21c
Time: 2014-10-25
Author: jai.rideout@gmail.com
File Name: skbio/io/fasta.py
Class Name:
Method Name: _fasta_to_rna_sequence


Project Name: biocore/scikit-bio
Commit Name: c80c7dff5ca3c602dd274384378109d7f021e21c
Time: 2014-10-25
Author: jai.rideout@gmail.com
File Name: skbio/io/fasta.py
Class Name:
Method Name: _fasta_to_dna_sequence