37014059366b55d8293dc38898769d28410e3926,scanpy/tools/spring.py,,plot_spring,#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#,81

Before Change

//                "the current step is", dspring["istep"],
//                "\n--> append, for example, "--plotparams add_steps 1", for a single step")
        from .. import plotting as plott
        plott.plot_tool(adata,
                        basis="spring",
                        toolkey="spring",
                        smp=smp,
                        names=names,
                        comps=comps,
                        cont=cont,
                        layout=layout,
                        legendloc=legendloc,
                        cmap=cmap,
                        pal=pal,
                        right_margin=right_margin,
                        size=size,
                        // defined in plotting
                        subtitles=["Fruchterman-Reingold step: 12"])
    else:
        Adj = dspring["Adj"]
        istep = dspring["istep"]
        // TODO: don"t save the adjacency matrix!!!

After Change

//                "the current step is", dspring["istep"],
//                "\n--> append, for example, "--plotparams add_steps 1", for a single step")
        from .. import plotting as plott
        smps = plott.scatter(adata,
                        basis="spring",
                        smp=smp,
                        names=names,
                        comps=comps,
                        cont=cont,
                        layout=layout,
                        legendloc=legendloc,
                        cmap=cmap,
                        pal=pal,
                        right_margin=right_margin,
                        size=size,
                        // defined in plotting
                        titles=["Fruchterman-Reingold step: 12"])
        writekey = sett.basekey + "_spring"
        writekey += "_" + ("-".join(smps) if smps[0] is not None else "") + sett.plotsuffix
        plott.savefig(writekey)
        if not sett.savefigs and sett.autoshow:
            from ..compat.matplotlib import pyplot as pl
            pl.show()
    else:
        Adj = dspring["Adj"]
        istep = dspring["istep"]
        // TODO: don"t save the adjacency matrix!!!

Instances