d1dc4e10fb6edeafe36429b672448b87bb8a795a,deepchem/molnet/load_function/qm8_datasets.py,,load_qm8,#Any#Any#Any#,12
Before Change
def load_qm8(featurizer="CoulombMatrix", split="random", reload=True):
if "DEEPCHEM_DATA_DIR" in os.environ:
data_dir = os.environ["DEEPCHEM_DATA_DIR"]
else:
data_dir = "/tmp"
if reload:
save_dir = os.path.join(data_dir, "qm8/" + featurizer + "/" + split)
if featurizer in ["CoulombMatrix", "BPSymmetryFunction", "MP", "Raw"]:
dataset_file = os.path.join(data_dir, "qm8.sdf")
if not os.path.exists(dataset_file):
os.system(
"wget -P " + data_dir +
" http://deepchem.io.s3-website-us-west-1.amazonaws.com/datasets/gdb8.tar.gz "
)
os.system("tar -zxvf " + os.path.join(data_dir, "gdb8.tar.gz") + " -C " +
data_dir)
else:
dataset_file = os.path.join(data_dir, "qm8.csv")
if not os.path.exists(dataset_file):
os.system(
"wget -P " + data_dir +
" http://deepchem.io.s3-website-us-west-1.amazonaws.com/datasets/qm8.csv "
)
qm8_tasks = [
"E1-CC2", "E2-CC2", "f1-CC2", "f2-CC2", "E1-PBE0", "E2-PBE0", "f1-PBE0",
After Change
def load_qm8(featurizer="CoulombMatrix", split="random", reload=True):
data_dir = deepchem.utils.get_data_dir()
if reload:
save_dir = os.path.join(data_dir, "qm8/" + featurizer + "/" + split)
if featurizer in ["CoulombMatrix", "BPSymmetryFunction", "MP", "Raw"]:
dataset_file = os.path.join(data_dir, "qm8.sdf")
if not os.path.exists(dataset_file):
deepchem.utils.download_url(
"http://deepchem.io.s3-website-us-west-1.amazonaws.com/datasets/gdb8.tar.gz"
)
os.system("tar -zxvf " + os.path.join(data_dir, "gdb8.tar.gz") + " -C " +
data_dir)
else:
dataset_file = os.path.join(data_dir, "qm8.csv")
if not os.path.exists(dataset_file):
deepchem.utils.download_url(
"http://deepchem.io.s3-website-us-west-1.amazonaws.com/datasets/qm8.csv"
)
qm8_tasks = [
"E1-CC2", "E2-CC2", "f1-CC2", "f2-CC2", "E1-PBE0", "E2-PBE0", "f1-PBE0",
In pattern: SUPERPATTERN
Frequency: 3
Non-data size: 20
Instances
Project Name: deepchem/deepchem
Commit Name: d1dc4e10fb6edeafe36429b672448b87bb8a795a
Time: 2017-08-28
Author: peastman@stanford.edu
File Name: deepchem/molnet/load_function/qm8_datasets.py
Class Name:
Method Name: load_qm8
Project Name: deepchem/deepchem
Commit Name: d1dc4e10fb6edeafe36429b672448b87bb8a795a
Time: 2017-08-28
Author: peastman@stanford.edu
File Name: deepchem/molnet/load_function/qm8_datasets.py
Class Name:
Method Name: load_qm8
Project Name: deepchem/deepchem
Commit Name: d1dc4e10fb6edeafe36429b672448b87bb8a795a
Time: 2017-08-28
Author: peastman@stanford.edu
File Name: deepchem/molnet/load_function/qm7_datasets.py
Class Name:
Method Name: load_qm7_from_mat
Project Name: deepchem/deepchem
Commit Name: d1dc4e10fb6edeafe36429b672448b87bb8a795a
Time: 2017-08-28
Author: peastman@stanford.edu
File Name: deepchem/molnet/load_function/qm9_datasets.py
Class Name:
Method Name: load_qm9