eefb7289f964533499cb31c0fc0ca37a2d2cc142,scanpy/tools/drawg.py,,plot,#Any#Any#Any#Any#Any#Any#Any#,79

Before Change

               "\n--> append, for example, "--plotparams add_steps 1", for a single step")
        istep = ddrawg["istep"]
        _plot(Y, ddata, params, istep)
        pl.savefig(sett.figdir+ddrawg["writekey"]
                   +"_step{:02}".format(istep)+"."+sett.extf)
        if sett.autoshow:
            pl.show()
    else:
        Adj = ddrawg["Adj"]

After Change

        sc.write(ddrawg["writekey"]+"_step{:02}".format(istep), ddrawg)
        // compute the next steps
        istep_init = istep + 1
        add_steps = params["add_steps"]
        del params["add_steps"]
        for istep in istep_init + np.arange(add_steps, dtype=int):
            sett.mt(0, "compute Fruchterman-Reingold layout: step", istep)
            Y = fruchterman_reingold_layout(Adj, Yinit=Y, iterations=step_size)

Instances