20df2162fbb6aff03feda464aca7c088834e2264,skbio/sequence/tests/test_sequence.py,TestSequence,test_kmer_frequencies,#TestSequence#,2001

Before Change

        self.assertEqual(seq.kmer_frequencies(3, overlap=False), expected)
        expected = Counter(["GATTACA"])
        self.assertEqual(seq.kmer_frequencies(7, overlap=False), expected)
        expected = Counter([])
        self.assertEqual(seq.kmer_frequencies(8, overlap=False), expected)

    def test_kmer_frequencies_relative(self):
        seq = Sequence("GATTACA", positional_metadata={"quality": range(7)})

After Change

        expected = {"GATTACA": 1}
        self.assertEqual(seq.kmer_frequencies(7, overlap=False), expected)

        expected = {}
        self.assertEqual(seq.kmer_frequencies(8, overlap=False), expected)

    def test_kmer_frequencies_relative(self):
        seq = Sequence("GATTACA", positional_metadata={"quality": range(7)})

Instances