06a3d0890b11544375040024326f69f252e30601,dipy/workflows/segment.py,MedianOtsuFlow,run,#MedianOtsuFlow#Any#Any#Any#Any#Any#Any#Any#Any#Any#Any#,18

Before Change

            logging.info("Applying median_otsu segmentation on {0}".
                         format(fpath))

            img = nib.load(fpath)
            volume = img.get_data()

            masked_volume, mask_volume = median_otsu(volume, median_radius,
                                                     numpass, autocrop, vol_idx,
                                                     dilate)

            mask_img = nib.Nifti1Image(mask_volume.astype(np.float32),
                                       img.get_affine())

            mask_img.to_filename(mask_out_path)
            logging.info("Mask saved as {0}".format(mask_out_path))

            if save_masked:
                masked_img = nib.Nifti1Image(masked_volume, img.get_affine(),
                                             img.get_header())

                masked_img.to_filename(masked_out_path)
                logging.info("Masked volume saved as {0}".
                             format(masked_out_path))

        return io_it

After Change

            logging.info("Applying median_otsu segmentation on {0}".
                         format(fpath))

            data, affine, img = load_nifti(fpath, return_img=True)

            masked_volume, mask_volume = median_otsu(data, median_radius,
                                                     numpass, autocrop, vol_idx,

Instances