e15f10468843f8e18919034a98a80598fc21ae7e,doc/examples/scripts/structure/ku_superimposition.py,,,#,25

Before Change

ku_dna = pdbx.get_structure(
    pdbx.PDBxFile.read(rcsb.fetch("1JEY", "mmtf")), model=1
)
ku = pdbx.get_structure(
    pdbx.PDBxFile.read(rcsb.fetch("1JEQ", "mmtf")), model=1
)
// Remove DNA and water
ku_dna = ku_dna[(ku_dna.chain_id == "A") | (ku_dna.chain_id == "B")]
ku_dna = ku_dna[~struc.filter_solvent(ku_dna)]
ku = ku[~struc.filter_solvent(ku)]

After Change

// Download and parse structure files
ku_dna = pdbx.get_structure(pdbx.PDBxFile.read(rcsb.fetch("1JEY", "cif")))[0]
ku     = pdbx.get_structure(pdbx.PDBxFile.read(rcsb.fetch("1JEQ", "cif")))[0]
// Remove DNA and water
ku_dna = ku_dna[(ku_dna.chain_id == "A") | (ku_dna.chain_id == "B")]
ku_dna = ku_dna[~struc.filter_solvent(ku_dna)]
ku = ku[~struc.filter_solvent(ku)]

Instances