2c339f08da80a6a6d52df37b64fe148155a13e86,cellprofiler/modules/align.py,Align,apply_alignment,#Align#Any#Any#Any#Any#Any#Any#,426

Before Change

            //
            // Construct a mask over the zero-filling
            //
            mask = np.zeros(output_pixels.shape, bool)
            p1, m2 = offset_slice(pixels, mask, off_y, off_x)
            m2[:,:] = True
            
            if image.has_mask:

After Change

        crop_mask = np.zeros(image.pixel_data.shape, bool)
        p1, p2 = offset_slice(crop_mask, output_pixels, off_y, off_x)
        p1[:,:] = True
        if np.all(crop_mask):
            crop_mask = None
        output_image = cpi.Image(output_pixels, 
                                 mask = output_mask, 
                                 crop_mask = crop_mask,
                                 parent_image = image)

Instances