3eea3791dc36fbfc521b45b9eebd854c73908b62,dataPrepScripts/GetTruth.py,,OutputVariant,#Any#,4

Before Change

    var_fp = open(var_fn, "w")

    with open(vcf_fn, "r") as vcf_fp:
        for row in vcf_fp.readlines():
            row = row.strip().split()
            if row[0][0] == "//":
                continue

After Change

        p1 = int(p1)
        p2 = int(p2)
        p1, p2 = (p1, p2) if p1 < p2 else (p2, p1)
        var_fp.stdin.write(" ".join([row[0], row[1], row[3], row[4], str(p1), str(p2), "\n"]))
    var_fp.stdin.close()
    var_fp.wait()
    vcf_fp.stdout.close()
    vcf_fp.wait()
    var_fpo.close()

Instances