471de24ebc24ecc869ee0db0219d686325611c3b,scanpy/preprocessing/normalization.py,,normalize_quantile,#Any#Any#Any#Any#Any#Any#Any#,20

Before Change

    if layer_norm == "after":
        after = cell_sum_after
    elif layer_norm == "X":
        after = np.median(counts_per_cell[counts_per_cell>0])
    elif layer_norm is None:
        after = None
    else: raise ValueError("layer_norm should be "after", "X" or None")

After Change

    if layer_norm == "after":
        after = cell_sum_after
    elif layer_norm == "X":
        after = np.median(counts_per_cell[cell_subset])
    elif layer_norm is None:
        after = None
    else: raise ValueError("layer_norm should be "after", "X" or None")
    del cell_subset

Instances