bbf56fc18b3f67617eafcc7b0a4c700fd43fa1b5,cnvlib/importers.py,,load_targetcoverage_csv,#Any#,46

Before Change

    if no_cvg_cnt > TOO_MANY_NO_COVERAGE:
        echo("*WARNING* Sample", fname, "has >", TOO_MANY_NO_COVERAGE,
             "probes with no coverage")
    pset = CNA.from_rows(core.fbase(fname), cna_rows, ("gc",))
    pset.sort()
    return pset

After Change

    if no_cvg_cnt > TOO_MANY_NO_COVERAGE:
        echo("*WARNING* Sample", fname, "has >", TOO_MANY_NO_COVERAGE,
             "probes with no coverage")
    pset = _GA.from_rows(cna_rows, ("gc",), {"sample_id": core.fbase(fname)})
    pset.sort()
    return pset

Instances