477a5bd10b53b4715f9707c8af7aac4cdba31a6a,anvio/contigops.py,Auxiliary,__init__,#Auxiliary#Any#Any#Any#Any#Any#,152

Before Change

                raise ConfigError("Auxiliary :: You want to profile SCVs. That"s great! But in that "
                                  "case self.split.gene_calls must not be None")

            if "base_pos_in_codon" not in self.split.per_position_info:
                raise ConfigError("Auxiliary :: This split does not contain the info required for SCV profiling")

After Change

        self.cdn_to_array_index = {cdn: i for i, cdn in enumerate(constants.codons)}

        if self.profile_SCVs:
            if not all([necessary in self.split.per_position_info for necessary in ["forward", "gene_start", "gene_stop"]]):
                raise ConfigError("Auxiliary :: self.split.per_position_info does not contain the info required for SCV profiling")

Instances