449ce796e6f506a28075f16099c986e298141569,pynets/nodemaker.py,,gen_network_parcels,#Any#Any#Any#Any#,288

Before Change

def gen_network_parcels(parlistfile, network, labels, dir_path):
    bna_img = nib.load(parlistfile)
    if bna_img.get_data_dtype() != np.dtype(np.int):
        bna_data_for_coords = bna_img.get_data()
        // Number of parcels:
        par_max = np.ceil(np.max(bna_data_for_coords)).astype("int")
    else:
        bna_data = bna_img.get_data()
        par_max = np.max(bna_data)
    img_stack = []
    ////Set indices
    for idx in range(1, par_max+1):
        roi_img = bna_data == idx

After Change

        roi_img = bna_data == bna_data_for_coords_uniq[idx].astype("int16")
        roi_img = roi_img.astype("int16")
        img_stack.append(roi_img)
    img_stack = np.array(img_stack).astype("int16")
    img_list = []
    for idy in range(par_max):
        roi_img_nifti = new_img_like(bna_img, img_stack[idy])
        img_list.append(roi_img_nifti)

Instances